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Nucleotide sequence alignment and compression via shortest unique substring
(Springer Verlag, 2015)
Aligning short reads produced by high throughput sequencing equipments onto a reference genome is the fundamental step of sequence analysis. Since the sequencing machinery generates massive volumes of data, it is becoming ...
Range selection queries in data aware space and time
(Institute of Electrical and Electronics Engineers, 2015)
On a given vector X = (x<inf>1</inf>, x<inf>2</inf>, , x<inf>n</inf>) of integers, the range selection (i, j, k) query is finding the k-th smallest integer in (x<inf>i</inf>, x<inf>i+1</inf>, , x<inf>j</inf>) for any (i, ...