Browsing by Author "Faro, Simone"

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Fast and flexible packed string matching

Faro, Simone; Külekci, Muhammed Oǧuzhan (Elsevier, 2014)

Searching for all occurrences of a pattern in a text is a fundamental problem in computer science with applications in many other fields, like natural language processing, information retrieval and computational biology. ...
Nucleotide sequence alignment and compression via shortest unique substring

Adaş, Boran; Bayraktar, Ersin; Faro, Simone; Moustafa, Ibraheem Elsayed; Külekçi, Muhammed Oǧuzhan (Springer Verlag, 2015)

Aligning short reads produced by high throughput sequencing equipments onto a reference genome is the fundamental step of sequence analysis. Since the sequencing machinery generates massive volumes of data, it is becoming ...